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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
28
Transcription
Target of assay
3
control
Date released
12
February, 2020
11
July, 2019
4
February, 2023
2
March, 2020
1
October, 2019
Available data
248
bam
234
bed narrowPeak
226
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
30
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
30
Homo sapiens
Biosample type
27
tissue
3
primary cell
Organ
477
connective tissue
401
adipose tissue
378
pancreas
174
liver
168
heart
120
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
25
brain
19
kidney
12
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
thymus
Project
30
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
30
AMP-T2D consortium
Audit category:
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inconsistent ontology term
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
frontal cortex
2
1
retina
3
Ammon's horn
1
1
cerebellum
2
diencephalon
1
1
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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