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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
total RNA-seq
2
small RNA-seq
1
pCHi-C
Assay category
22
Transcription
Date released
8
August, 2021
4
February, 2018
4
July, 2019
3
March, 2020
2
February, 2020
2
May, 2021
Available data
97
bigWig
93
bam
74
bed narrowPeak
47
bigBed narrowPeak
46
bed broadPeak
37
bed bed3+
33
bigBed broadPeak
29
fastq
23
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
23
Homo sapiens
Biosample type
8
cell line
7
tissue
6
in vitro differentiated cells
2
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
23
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
small RNA-seq
pCHi-C
cell line
H1-hESC
8
tissue
psoas muscle
2
1
skeletal muscle tissue
1
1
gastrocnemius medialis
1
left ventricle myocardium
1
in vitro differentiated cells
pancreatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
skeletal muscle satellite cell
1
1
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