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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
169
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
pCHi-C
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
432
DNA binding
172
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
171
May, 2020
52
November, 2018
50
December, 2017
26
August, 2021
20
May, 2022
18
August, 2017
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
June, 2019
1
February, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
175
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
635
Homo sapiens
Biosample type
342
cell line
268
tissue
14
in vitro differentiated cells
11
primary cell
Organ
634
liver
632
pancreas
574
connective tissue
428
adipose tissue
322
heart
310
epithelium
236
brain
165
vasculature
160
blood vessel
143
kidney
94
limb
89
artery
71
musculature of body
58
bone element
55
blood
55
bodily fluid
32
nerve
29
embryo
18
ureter
17
spleen
15
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
635
AMP
Genome assembly (visualization)
617
hg19
528
GRCh38
Lab
592
AMP-T2D consortium
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
635 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
WGBS
cell line
HepG2
326
14
1
1
tissue
liver
82
147
20
2
1
1
right lobe of liver
7
3
1
1
2
esophagus
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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