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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
3
ChIP-seq
1
DNase-seq
1
pCHi-C
Assay category
14
Transcription
3
DNA binding
1
DNA accessibility
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Date released
8
August, 2021
4
February, 2018
3
December, 2017
2
May, 2021
1
March, 2020
1
November, 2018
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
19
Homo sapiens
Biosample type
9
in vitro differentiated cells
8
cell line
2
tissue
Organ
505
connective tissue
446
pancreas
407
adipose tissue
198
heart
187
liver
177
epithelium
102
kidney
81
vasculature
79
blood vessel
62
artery
61
brain
58
bone element
43
limb
43
musculature of body
18
ureter
17
embryo
9
eye
7
nerve
2
intestine
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
19 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
4
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
spleen
1
1
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