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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
148
Transcription
6
DNA methylation
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
6
December, 2019
6
May, 2021
5
July, 2019
4
March, 2020
3
August, 2018
3
October, 2019
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
341
bam
317
bigWig
281
fastq
165
bed narrowPeak
157
tsv
89
bigBed narrowPeak
80
zippedFastqFolder
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
157
Homo sapiens
Biosample type
116
primary cell
35
cell line
4
tissue
2
in vitro differentiated cells
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
149
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
151
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
spleen
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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