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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
16
single cell RNA-seq
1
MPRA
Assay category
75
Transcription
DNA accessibility
Date released
90
February, 2021
57
August, 2021
6
May, 2022
4
February, 2023
1
November, 2018
1
October, 2022
1
September, 2018
Available data
3003
bam
2779
bigWig
1586
tsv
1285
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
159
Homo sapiens
Biosample type
157
tissue
2
primary cell
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
liver
Project
160
AMP
Lab
97
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
primary cell
pancreatic cell
2
cell line
MIN6
1
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