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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
ChIP-seq
1
MPRA
Assay category
DNA accessibility
79
DNA binding
Transcription
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
84
February, 2021
64
November, 2017
13
August, 2017
2
October, 2019
1
October, 2022
Available data
1597
bam
1417
bigWig
1325
bed narrowPeak
885
fastq
801
bigBed narrowPeak
398
tagAlign
114
bed broadPeak
85
txt
79
bigBed broadPeak
62
bed bed3+
42
tsv
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
163
Homo sapiens
Biosample type
84
tissue
59
cell line
21
primary cell
Organ
84
bone element
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
164
AMP
Genome assembly (visualization)
79
hg19
62
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
DNA accessibility
BIOSAMPLE
ASSAY
164 results
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Clear Filters
RNA microarray
ChIP-seq
MPRA
tissue
bone element
84
cell line
HepG2
58
MIN6
1
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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