Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
3
ATAC-seq
Assay category
Transcription
5
3D chromatin structure
3
DNA accessibility
Date released
3
February, 2023
3
October, 2022
2
August, 2021
Available data
274
bed narrowPeak
212
bigWig
103
bam
101
zippedFastqFolder
84
tagAlign
64
xls
63
fastq
7
hic
6
tsv
5
bedpe bed3+
3
bed bedgraph
3
cool
3
txt
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
8
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
1
cell line
1
tissue
Organ
4
pancreas
3
epithelium
1
liver
Project
5
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
8 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
tissue
islet of Langerhans
1
Download