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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
MPRA
Assay category
124
Transcription
60
DNA accessibility
41
DNA methylation
Date released
140
May, 2022
89
February, 2021
57
August, 2021
19
September, 2020
4
February, 2023
1
October, 2022
Available data
394
bam
350
fastq
198
tsv
179
bed narrowPeak
160
tagAlign
157
txt
153
zippedFastqFolder
113
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
309
Homo sapiens
Biosample type
156
tissue
153
primary cell
1
cell line
Organ
88
bone element
86
pancreas
80
epithelium
62
kidney
4
skeleton
Project
157
AMP
153
HPAP
Genome assembly (visualization)
hg19
Lab
153
Klaus Kaestner, Upenn
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
310 results
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RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
snATAC-seq
MPRA
tissue
bone element
84
kidney
13
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
MIN6
1
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