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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
3
Hi-C
1
snATAC-seq
Assay category
4
DNA accessibility
3
3D chromatin structure
Date released
3
February, 2023
3
October, 2022
1
May, 2022
Available data
3016
bigWig
2998
bam
1598
bed narrowPeak
1402
tsv
1008
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
250
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
1
tissue
Organ
3
epithelium
3
pancreas
1
musculature of body
Project
4
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
Lab
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
1
AMP-T2D consortium
Audit category:
4
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
7 results
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ATAC-seq
Hi-C
snATAC-seq
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
skeletal muscle tissue
1
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