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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
59
Transcription
3
DNA accessibility
Date released
49
August, 2021
7
May, 2022
6
February, 2023
1
October, 2022
Available data
3087
bam
2844
bigWig
1714
bed narrowPeak
1254
tsv
1226
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
101
zippedFastqFolder
64
xls
63
txt
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
62
Homo sapiens
Biosample type
60
tissue
2
in vitro differentiated cells
1
cell line
Organ
49
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
63
AMP
Genome assembly (visualization)
3
hg19
Lab
49
Katalin Susztak, Upenn
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
63 results
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total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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