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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
14
ATAC-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
15
DNA accessibility
Date released
57
August, 2021
16
February, 2023
7
February, 2021
7
May, 2022
1
October, 2022
Available data
3180
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
87
Homo sapiens
Biosample type
78
tissue
7
in vitro differentiated cells
2
cell line
1
primary cell
Organ
62
kidney
8
bone element
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
88
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
57
Katalin Susztak, Upenn
23
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
1
inconsistent replicate
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
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