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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
41
WGBS
39
ATAC-seq
22
snATAC-seq
1
MPRA
Assay category
124
Transcription
61
DNA accessibility
41
DNA methylation
Date released
141
May, 2022
89
February, 2021
57
August, 2021
19
September, 2020
4
February, 2023
1
October, 2022
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
310
Homo sapiens
Biosample type
157
tissue
153
primary cell
in vitro differentiated cells
1
cell line
Organ
88
bone element
86
pancreas
80
epithelium
62
kidney
4
skeleton
1
musculature of body
Project
158
AMP
153
HPAP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
311 results
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RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
snATAC-seq
MPRA
tissue
bone element
84
kidney
13
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
MIN6
1
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