Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
156
total RNA-seq
84
RNA microarray
29
ATAC-seq
13
single cell RNA-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
1
snATAC-seq
Assay category
220
DNA binding
169
Transcription
42
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
89
February, 2021
58
October, 2018
57
August, 2021
48
December, 2017
26
November, 2018
25
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
February, 2023
2
July, 2018
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
521
Homo sapiens
Biosample type
528
tissue
428
cell line
409
primary cell
144
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
88
bone element
83
liver
62
kidney
43
adipose tissue
43
connective tissue
24
spleen
12
brain
4
skeleton
3
musculature of body
Project
528
AMP
Genome assembly (visualization)
295
hg19
280
GRCh38
Lab
445
AMP-T2D consortium
57
Katalin Susztak, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
528 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
28
103
20
1
1
bone element
84
liver
67
2
1
1
kidney
49
13
body of pancreas
33
4
2
2
+ See 14 more…
See all biosamples
Download