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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
19
RRBS
17
WGBS
15
ATAC-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
36
DNA methylation
16
DNA accessibility
Date released
91
February, 2021
57
August, 2021
23
July, 2019
17
February, 2023
7
May, 2022
7
November, 2018
6
August, 2017
1
October, 2022
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
208
Homo sapiens
Biosample type
187
tissue
11
primary cell
8
in vitro differentiated cells
3
cell line
Organ
92
bone element
66
kidney
12
pancreas
9
connective tissue
8
heart
8
skeleton
6
epithelium
5
musculature of body
4
liver
3
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
209
AMP
Genome assembly (visualization)
35
hg19
19
GRCh38
Lab
143
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
87
inconsistent ontology term
6
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
209 results
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RNA microarray
total RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
1
heart left ventricle
1
2
pancreas
1
2
+ See 16 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
1
MIN6
1
See all biosamples
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