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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
9
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
10
DNA accessibility
Date released
90
February, 2021
57
August, 2021
12
February, 2023
7
May, 2022
1
October, 2022
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
166
Homo sapiens
Biosample type
162
tissue
3
in vitro differentiated cells
2
cell line
Organ
92
bone element
62
kidney
8
skeleton
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
167
AMP
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
101
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
167 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
+ See 4 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
See all biosamples
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