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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
176
total RNA-seq
84
RNA microarray
32
ATAC-seq
13
single cell RNA-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
MPRA
1
pCHi-C
1
snATAC-seq
Assay category
763
DNA binding
189
Transcription
46
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
94
December, 2017
89
February, 2021
87
November, 2018
58
October, 2018
57
August, 2021
39
February, 2018
35
December, 2018
30
January, 2019
25
May, 2022
17
October, 2017
7
February, 2023
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
1
October, 2022
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1096
Homo sapiens
Biosample type
528
tissue
428
cell line
primary cell
144
in vitro differentiated cells
4
stem cell
Organ
465
liver
213
pancreas
98
connective tissue
88
bone element
62
kidney
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
4
skeleton
3
musculature of body
Project
1104
AMP
Genome assembly (visualization)
786
hg19
722
GRCh38
5
hg18
Lab
1018
AMP-T2D consortium
57
Katalin Susztak, Upenn
24
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
28
inconsistent control
6
audit script error
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
1104 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
MPRA
pCHi-C
snATAC-seq
tissue
islet of Langerhans
28
103
20
1
1
bone element
84
liver
67
2
1
1
kidney
49
13
body of pancreas
33
4
2
2
+ See 14 more…
cell line
HepG2
360
5
1
1
GM12878
60
MIN6
1
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 9 more…
stem cell
hESC
3
1
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