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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
58
WGBS
42
ATAC-seq
22
snATAC-seq
19
RRBS
1
MPRA
Assay category
124
Transcription
77
DNA methylation
64
DNA accessibility
Date released
141
May, 2022
89
February, 2021
57
August, 2021
23
July, 2019
19
September, 2020
7
February, 2023
7
November, 2018
6
August, 2017
1
October, 2022
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
349
Homo sapiens
Biosample type
182
tissue
163
primary cell
3
in vitro differentiated cells
2
cell line
Organ
92
pancreas
88
bone element
86
epithelium
66
kidney
8
heart
5
musculature of body
4
skeleton
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
197
AMP
153
HPAP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
153
Klaus Kaestner, Upenn
131
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
87
inconsistent ontology term
6
audit script error
BIOSAMPLE
ASSAY
350 results
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RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
snATAC-seq
RRBS
MPRA
tissue
bone element
84
kidney
13
49
1
islet of Langerhans
6
1
heart left ventricle
2
1
pancreas
2
1
+ See 16 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
See all biosamples
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