Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
21
Hi-C
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
72
Transcription
21
3D chromatin structure
3
DNA accessibility
Date released
89
February, 2021
59
August, 2021
8
March, 2020
7
February, 2023
6
May, 2022
4
October, 2019
4
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3335
bam
3061
bigWig
1717
bed narrowPeak
1591
tsv
1356
fastq
995
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
252
bigBed broadPeak
239
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
180
Homo sapiens
Biosample type
165
tissue
7
in vitro differentiated cells
6
primary cell
3
cell line
Organ
88
bone element
63
kidney
13
pancreas
6
epithelium
4
skeleton
3
blood vessel
3
heart
musculature of body
3
vasculature
2
liver
2
vein
Project
177
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
108
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
9
audit script error
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
2
acetabular part of hip bone
1
aorta
1
+ See 8 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
See all biosamples
Download