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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
MPRA
1
whole genome sequencing assay
Assay category
Transcription
3
DNA accessibility
1
DNA sequencing
Date released
84
February, 2021
3
February, 2023
1
August, 2021
1
October, 2022
Available data
1935
bam
1757
bed narrowPeak
1705
bigWig
995
bigBed narrowPeak
985
fastq
383
tagAlign
276
bed broadPeak
252
bigBed broadPeak
237
bed bed3+
101
zippedFastqFolder
88
txt
64
xls
55
tsv
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
88
Homo sapiens
Biosample type
84
tissue
3
in vitro differentiated cells
2
cell line
Organ
84
bone element
1
liver
musculature of body
Project
89
AMP
Genome assembly (visualization)
3
hg19
Lab
85
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
89 results
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RNA microarray
ATAC-seq
MPRA
whole genome sequencing assay
tissue
bone element
84
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
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