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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
1
whole genome sequencing assay
Assay category
72
Transcription
68
DNA accessibility
1
DNA sequencing
Date released
122
August, 2021
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
225
Homo sapiens
Biosample type
221
tissue
3
in vitro differentiated cells
2
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
1
liver
1
musculature of body
Project
226
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
6
audit script error
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
226 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
whole genome sequencing assay
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
See all biosamples
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