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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
Assay category
75
DNA accessibility
Date released
64
August, 2021
10
February, 2023
1
February, 2021
Available data
3392
bam
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
69
tissue
5
in vitro differentiated cells
1
cell line
Organ
64
kidney
5
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
75
AMP
Genome assembly (visualization)
65
GRCh38
11
hg19
Lab
64
Katalin Susztak, Upenn
11
AMP-T2D consortium
Audit category:
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
tissue
kidney
64
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
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in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
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