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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
113
ChIP-seq
66
ATAC-seq
Assay category
263
DNA accessibility
113
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
64
August, 2021
39
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
370
Homo sapiens
Biosample type
274
tissue
59
cell line
43
primary cell
Organ
142
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
376
AMP
Genome assembly (visualization)
337
GRCh38
289
hg19
Lab
310
AMP-T2D consortium
64
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
376 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
kidney
13
64
heart
18
brain
14
3
muscle of arm
17
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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