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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
23
Hi-C
Assay category
64
DNA accessibility
23
3D chromatin structure
Date released
66
August, 2021
10
March, 2020
4
October, 2019
3
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
87
Homo sapiens
Biosample type
75
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
65
kidney
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
Project
83
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
65
GRCh38
22
hg19
Lab
65
Katalin Susztak, Upenn
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
87 results
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ATAC-seq
Hi-C
tissue
kidney
64
1
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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