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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
ATAC-seq
53
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
DNA accessibility
66
Transcription
Date released
121
August, 2021
89
February, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
218
Homo sapiens
Biosample type
215
tissue
3
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
4
skeleton
1
musculature of body
Project
219
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
219 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
64
49
13
bone element
84
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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