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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
20
Hi-C
3
pCHi-C
Assay category
124
DNA accessibility
52
Transcription
41
DNA methylation
20
3D chromatin structure
Date released
134
May, 2022
66
August, 2021
19
September, 2020
12
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
240
Homo sapiens
Biosample type
157
primary cell
74
tissue
7
in vitro differentiated cells
2
cell line
Organ
87
pancreas
85
epithelium
64
kidney
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
156
HPAP
84
AMP
Genome assembly (visualization)
64
GRCh38
21
hg19
Lab
156
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
18
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
240 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
1
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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