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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
60
DNA accessibility
52
Transcription
19
DNA methylation
Date released
93
May, 2022
19
September, 2020
15
July, 2019
4
August, 2017
Available data
3374
bam
3112
bigWig
1777
bed narrowPeak
1594
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
131
Homo sapiens
Biosample type
122
primary cell
9
tissue
Organ
45
epithelium
41
pancreas
4
kidney
3
musculature of body
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
112
HPAP
19
AMP
Genome assembly (visualization)
19
hg19
Lab
112
Klaus Kaestner, Upenn
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
131 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
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