Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
4
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
4
July, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
157
Homo sapiens
Biosample type
157
primary cell
1
cell line
Organ
82
epithelium
80
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
153
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
153
Klaus Kaestner, Upenn
4
AMP-T2D consortium
BIOSAMPLE
ASSAY
157 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
See all biosamples
Download