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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
22
snATAC-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
Assay category
54
Transcription
26
DNA accessibility
4
3D chromatin structure
Date released
55
May, 2022
19
September, 2020
4
February, 2023
4
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
Available data
bam
2546
bigWig
1603
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
87
Homo sapiens
Biosample type
79
primary cell
6
in vitro differentiated cells
1
cell line
1
tissue
Organ
82
epithelium
pancreas
7
connective tissue
3
brain
2
blood vessel
2
liver
2
vasculature
1
musculature of body
Project
73
HPAP
14
AMP
Genome assembly (visualization)
14
hg19
Lab
73
Klaus Kaestner, Upenn
10
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
files.file_type!
bam
BIOSAMPLE
ASSAY
87 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
Hi-C
Capture-C
total RNA-seq
pCHi-C
primary cell
Langerhans cell
52
21
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
See all biosamples
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