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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
49
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
70
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
10
February, 2023
February, 2021
Available data
2820
bam
2578
bigWig
1754
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
163
Homo sapiens
Biosample type
153
primary cell
5
in vitro differentiated cells
5
tissue
Organ
80
epithelium
80
pancreas
5
connective tissue
4
bone element
4
skeleton
1
brain
Project
153
HPAP
10
AMP
Genome assembly (visualization)
10
hg19
Lab
153
Klaus Kaestner, Upenn
10
AMP-T2D consortium
month_released!
February, 2021
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
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