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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
45
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
66
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
6
February, 2023
Available data
3326
bam
3111
bigWig
bed narrowPeak
1542
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
159
Homo sapiens
Biosample type
153
primary cell
5
in vitro differentiated cells
1
tissue
Organ
80
epithelium
80
pancreas
5
connective tissue
bone element
4
skeleton
1
brain
Project
153
HPAP
6
AMP
Genome assembly (visualization)
6
hg19
Lab
153
Klaus Kaestner, Upenn
6
AMP-T2D consortium
organ_slims!
bone element
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
159 results
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Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
chondrocyte
5
tissue
brain
1
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