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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1285
ChIP-seq
317
ATAC-seq
209
DNase-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
5
FAIRE-seq
Assay category
317
DNA accessibility
Date released
77
May, 2022
76
August, 2021
65
February, 2023
26
November, 2019
18
February, 2021
14
September, 2018
13
May, 2021
6
October, 2017
6
October, 2019
5
August, 2017
5
July, 2019
5
September, 2017
1
November, 2020
Available data
278
bed narrowPeak
175
bam
136
bigWig
64
xls
61
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
317
Homo sapiens
Biosample type
208
tissue
78
primary cell
21
in vitro differentiated cells
10
cell line
Organ
103
pancreas
75
epithelium
64
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
27
eye
23
liver
8
bone element
8
connective tissue
8
limb
8
skeleton
4
adipose tissue
1
nerve
1
spleen
Project
278
AMP
39
HPAP
Genome assembly (visualization)
208
GRCh38
179
hg19
Lab
172
AMP-T2D consortium
64
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
317 results
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Clear Filters
ATAC-seq
tissue
kidney
64
islet of Langerhans
37
coronary artery
36
liver
20
retina
15
+ See 21 more…
primary cell
pancreatic alpha cell
28
pancreatic beta cell
20
monocyte
13
pancreatic acinar cell
9
pancreatic ductal cell
4
+ See 3 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
See all biosamples
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