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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ATAC-seq
205
DNase-seq
21
snATAC-seq
4
FAIRE-seq
Assay category
1193
DNA binding
542
DNA accessibility
52
Transcription
41
DNA methylation
Date released
187
June, 2019
98
May, 2022
76
August, 2021
65
February, 2023
26
November, 2019
18
February, 2021
15
October, 2019
14
September, 2018
13
May, 2021
August, 2017
10
November, 2018
7
July, 2019
6
October, 2017
5
September, 2017
2
November, 2020
Available data
482
bed narrowPeak
379
bam
340
bigWig
231
bigBed narrowPeak
209
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
93
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
542
Homo sapiens
Biosample type
385
tissue
124
primary cell
21
in vitro differentiated cells
12
cell line
Organ
144
kidney
108
pancreas
90
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
33
brain
33
musculature of body
31
eye
27
liver
18
ureter
15
connective tissue
8
bone element
8
skeleton
5
adipose tissue
3
nerve
3
vein
2
spleen
Project
482
AMP
60
HPAP
Genome assembly (visualization)
408
GRCh38
360
hg19
Lab
376
AMP-T2D consortium
64
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
1
inconsistent replicate
month_released!
August, 2017
BIOSAMPLE
ASSAY
542 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
64
13
1
coronary artery
36
2
islet of Langerhans
37
liver
20
2
heart
18
+ See 52 more…
primary cell
pancreatic alpha cell
27
Langerhans cell
21
pancreatic beta cell
19
monocyte
13
pancreatic acinar cell
8
+ See 25 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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