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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
5
Hi-C
Assay category
41
DNA methylation
39
DNA accessibility
5
3D chromatin structure
Date released
80
May, 2022
3
October, 2022
1
March, 2020
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
85
Homo sapiens
Biosample type
84
primary cell
1
cell line
Organ
87
pancreas
85
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
83
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
83
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
85 results
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WGBS
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
1
cell line
EndoC_BH1
1
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