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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
114
ChIP-seq
58
WGBS
52
single cell RNA-seq
41
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
268
DNA accessibility
114
DNA binding
77
DNA methylation
52
Transcription
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
70
November, 2017
47
August, 2017
23
July, 2019
19
September, 2020
16
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
505
Homo sapiens
Biosample type
238
tissue
212
primary cell
60
cell line
1
in vitro differentiated cells
Organ
108
epithelium
107
pancreas
82
kidney
66
liver
50
musculature of body
49
brain
38
heart
37
limb
19
vasculature
18
ureter
14
blood vessel
13
connective tissue
5
adipose tissue
5
eye
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
358
AMP
153
HPAP
Genome assembly (visualization)
317
hg19
299
GRCh38
Lab
356
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
BIOSAMPLE
ASSAY
511 results
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DNase-seq
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
kidney
13
1
+ See 49 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
+ See 22 more…
cell line
HepG2
58
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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