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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
75
DNA methylation
60
DNA accessibility
52
Transcription
Date released
134
May, 2022
23
July, 2019
19
September, 2020
6
August, 2017
5
November, 2018
Available data
3368
bam
3113
bigWig
1763
bed narrowPeak
1599
tsv
1334
fastq
1029
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
187
Homo sapiens
Biosample type
163
primary cell
23
tissue
1
cell line
Organ
86
epithelium
86
pancreas
8
heart
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
34
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
153
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
187 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
cell line
HepG2
1
See all biosamples
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