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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
63
ATAC-seq
52
single cell RNA-seq
41
WGBS
32
DNase-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
424
DNA binding
117
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
340
transcription factor
81
recombinant protein
79
histone
79
histone modification
73
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
134
May, 2022
56
November, 2018
47
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
19
September, 2020
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
634
Homo sapiens
Biosample type
tissue
355
cell line
262
primary cell
17
in vitro differentiated cells
Organ
309
liver
156
epithelium
109
pancreas
54
blood
54
bodily fluid
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
481
AMP
153
HPAP
Genome assembly (visualization)
470
hg19
443
GRCh38
Lab
481
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
634 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
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in vitro differentiated cells
hepatocyte
14
adipocyte
2
1
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