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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
3
Hi-C
Assay category
60
DNA accessibility
52
Transcription
DNA methylation
3
3D chromatin structure
Date released
93
May, 2022
19
September, 2020
3
October, 2022
Available data
3374
bam
3112
bigWig
1777
bed narrowPeak
1594
tsv
1337
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
115
Homo sapiens
Biosample type
115
primary cell
Organ
42
epithelium
42
pancreas
Project
115
HPAP
Genome assembly (visualization)
3
hg19
Lab
115
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
115 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
1
pancreatic beta cell
13
1
pancreatic acinar cell
4
1
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