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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
5
Hi-C
Assay category
124
DNA accessibility
52
Transcription
41
DNA methylation
5
3D chromatin structure
Date released
134
May, 2022
64
August, 2021
19
September, 2020
4
July, 2019
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
222
Homo sapiens
Biosample type
157
primary cell
64
tissue
1
cell line
Organ
82
epithelium
81
pancreas
64
kidney
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
153
HPAP
69
AMP
Genome assembly (visualization)
65
GRCh38
5
hg19
Lab
153
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
222 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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tissue
kidney
64
cell line
Panc1
1
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