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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
26
Hi-C
21
snATAC-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
26
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
10
March, 2020
4
July, 2019
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
179
Homo sapiens
Biosample type
162
primary cell
11
tissue
4
in vitro differentiated cells
2
cell line
Organ
88
epithelium
87
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
156
HPAP
23
AMP
Genome assembly (visualization)
27
hg19
GRCh38
Lab
156
Klaus Kaestner, Upenn
20
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
179 results
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single cell RNA-seq
WGBS
ATAC-seq
Hi-C
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 4 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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