Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
16
DNase-seq
8
Hi-C
3
ChIP-seq
Assay category
55
DNA accessibility
41
DNA methylation
8
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
80
May, 2022
14
June, 2019
3
August, 2021
3
October, 2019
3
October, 2022
2
July, 2019
1
March, 2020
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
107
Homo sapiens
Biosample type
106
primary cell
1
cell line
Organ
116
pancreas
107
epithelium
79
kidney
36
limb
36
musculature of body
35
brain
33
heart
27
connective tissue
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
83
HPAP
24
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
83
Klaus Kaestner, Upenn
24
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
107 results
search-icon
table-tab-icon
Clear Filters
WGBS
ATAC-seq
DNase-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
2
hepatocyte
1
3
+ See 12 more…
cell line
EndoC_BH1
1
See all biosamples
Download