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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
70
single cell RNA-seq
47
WGBS
40
ATAC-seq
1
RNA microarray
Assay category
162
Transcription
47
DNA methylation
40
DNA accessibility
Date released
80
May, 2022
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
8
August, 2021
8
May, 2021
6
December, 2019
5
July, 2019
4
February, 2018
3
August, 2018
3
March, 2020
3
October, 2019
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
349
bam
328
bigWig
280
fastq
170
tsv
163
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
24
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
250
Homo sapiens
Biosample type
196
primary cell
43
cell line
8
in vitro differentiated cells
3
tissue
Organ
497
pancreas
478
connective tissue
401
adipose tissue
236
epithelium
174
liver
168
heart
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
162
AMP
86
HPAP
2
T1D
Genome assembly (visualization)
161
hg19
160
GRCh38
Lab
164
AMP-T2D consortium
86
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
250 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
31
22
pancreatic beta cell
10
12
16
13
pancreatic acinar cell
4
12
4
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
33
1
H1-hESC
8
glomerular visceral epithelial cell
1
in vitro differentiated cells
pancreatic endoderm
4
endothelial cell
1
intermediate endothelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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