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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
41
WGBS
22
snATAC-seq
1
MPRA
Assay category
128
DNA accessibility
124
Transcription
41
DNA methylation
Date released
141
May, 2022
121
August, 2021
89
February, 2021
19
September, 2020
7
February, 2023
1
October, 2022
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
377
Homo sapiens
Biosample type
221
tissue
153
primary cell
3
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
86
pancreas
80
epithelium
4
skeleton
1
musculature of body
Project
225
AMP
153
HPAP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
153
Klaus Kaestner, Upenn
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
BIOSAMPLE
ASSAY
378 results
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ATAC-seq
RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
MPRA
tissue
kidney
64
13
49
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
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