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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
DNA binding
11
Transcription
1
3D chromatin structure
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
5
February, 2023
2
March, 2023
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
Organism
38
Homo sapiens
Biosample type
564
primary cell
348
tissue
54
in vitro differentiated cells
40
cell line
2
stem cell
Organ
30
liver
2
kidney
Project
33
AMP
5
T1D
2
community
Genome assembly (visualization)
15
hg19
Lab
AMP-T2D consortium
33
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
18
9
2
1
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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