Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
7
ChIP-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
Transcription
7
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
7
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
23
August, 2021
6
November, 2020
5
February, 2023
2
March, 2023
Available data
9
tsv
3
bed narrowPeak
3
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
34
Homo sapiens
Biosample type
564
primary cell
312
tissue
42
in vitro differentiated cells
36
cell line
2
stem cell
Organ
20
liver
6
epithelium
6
pancreas
2
kidney
Project
29
AMP
5
T1D
2
community
Genome assembly (visualization)
4
hg19
Lab
AMP-T2D consortium
23
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
lab.title!
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
36 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
9
7
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
See all biosamples
Download