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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
2
single cell RNA-seq
Assay category
198
DNA binding
137
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
83
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
4
February, 2023
2
December, 2019
2
March, 2020
2
October, 2019
Available data
128
tsv
126
bam
126
bigWig
15
fastq
Organism
137
Homo sapiens
Biosample type
1117
tissue
432
primary cell
137
in vitro differentiated cells
54
cell line
2
stem cell
Organ
9
connective tissue
6
embryo
2
epithelium
heart
Project
137
AMP
Genome assembly (visualization)
126
GRCh38
126
hg19
Lab
132
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
2
audit script error
lab.title!
Bing Ren, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
adipocyte
5
cardiomyocytes (cardiac muscle cell)
3
2
pancreatic endoderm
4
definitive endodermal cell
2
endocrine cell
2
immature adipocyte
2
posterior foregut
2
primitive gut cell
2
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
lymphocyte of B lineage (iPSC)
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
preadipocyte
1
smooth muscle cell
1
stem cell
1
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