Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
ChIP-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA accessibility
3
3D chromatin structure
2
Transcription
1
DNA binding
Target of assay
3
control
3
nucleotide modification
1
transcription factor
Date released
16
May, 2021
6
February, 2023
6
March, 2020
6
November, 2020
2
August, 2021
2
March, 2023
1
December, 2018
1
February, 2021
1
January, 2018
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
508
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
42
Homo sapiens
Biosample type
826
tissue
479
primary cell
103
in vitro differentiated cells
46
cell line
7
stem cell
Organ
29
pancreas
28
epithelium
4
liver
2
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
39
AMP
5
T1D
2
community
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
Bing Ren, UCSD
33
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
29
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
46 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
ChIP-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
18
6
3
1
2
2
1
HepG2
2
1
1
EndoC-BH1
1
1
GM12878
1
MCF-7
1
MIN6
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
See all biosamples
Download