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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
pCHi-C
Assay category
106
DNA binding
15
Transcription
Target of assay
53
histone
53
histone modification
31
transcription factor
28
narrow histone mark
24
broad histone mark
22
control
4
RNA binding protein
2
chromatin remodeller
Date released
53
August, 2017
39
February, 2018
29
December, 2017
4
January, 2018
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
126
Homo sapiens
Biosample type
366
primary cell
256
tissue
126
in vitro differentiated cells
80
cell line
4
stem cell
Organ
54
connective tissue
27
embryo
5
epithelium
1
adipose tissue
1
liver
Project
126
AMP
Genome assembly (visualization)
103
GRCh38
103
hg19
4
hg18
Lab
126
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Bing Ren, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
pancreatic endoderm
18
4
1
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
Hepatic endoderm
4
hepatocyte
1
islet precursor cell
1
white fat cell
1
See all biosamples
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