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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
Assay category
8
DNA binding
Target of assay
79
control
22
transcription factor
15
histone
15
histone modification
8
broad histone mark
8
recombinant protein
7
narrow histone mark
3
RNA binding protein
3
nucleotide modification
Date released
6
November, 2019
1
November, 2017
1
October, 2019
Available data
18
bam
17
bigWig
16
bed narrowPeak
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
8
fastq
6
tagAlign
Organism
8
Homo sapiens
Biosample type
101
primary cell
99
tissue
49
in vitro differentiated cells
8
cell line
1
stem cell
Organ
7
pancreas
6
epithelium
1
liver
Project
8
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
8
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
lab.title!
Bing Ren, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
cell line
EndoC_BH1
6
HepG2
1
Panc1
1
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