Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
152
single cell RNA-seq
Assay category
438
Transcription
270
DNA accessibility
172
DNA binding
47
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
81
February, 2023
67
August, 2021
59
May, 2021
59
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
12
February, 2021
9
April, 2020
March, 2023
3
May, 2023
Available data
132
fastq
106
tsv
102
bam
98
bigWig
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
438
Homo sapiens
Biosample type
275
primary cell
149
tissue
9
cell line
5
in vitro differentiated cells
Organ
107
kidney
66
pancreas
53
epithelium
29
liver
9
lung
Project
177
HPAP
104
AMP
101
T1D
47
KPMP
9
LungMap
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
177
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
March, 2023
BIOSAMPLE
ASSAY
438 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
49
58
liver
20
islet of Langerhans
12
lung
9
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
Download